YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654211, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.49
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSNQKLLIG VTGAIAAYKS VELVRRLREK GALVRVVMTS AAQAFITPLT FQAVSGHPVA  60
   61 VDLFSSDSSM GMEHIDLARW ADFVLIAPAS ADFIARLAHG RADDLLTTIC LATQAPIAVA 120
  121 PSMNQQMWRN KITQTNVDRL RDYGIHLFGP ATGEQACGDY GPGRLLEPEE LINQLAIHSV 180
  181 EKVLSGKQVL ITAGPTQEAI DPVRYLTNGS SGKMGFALAE AALAMGANVT LVSGPTPLKV 240
  241 SQKINRIDVT TATQMFETVI KHAVECDVFI GAAAVSDYRP KNFSPQKFKK SDANWALNLV 300
  301 RNPDIISEIG RLPNKPFVVG FALETDNPLD NAKLKLQKKN MNVIVVNEAS ALCSDENAVT 360
  361 LMTRSGKTKK LPMTTKKTLA LQLMEFVSKE M

Type	Start	End	Confidence
Cytoplasmic	1	32	0.44
Transmembrane Helix	33	51	0.42
Non-Cytoplasmic	52	391	0.85