YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654177, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVTTAVFP VAGLGTRFLP VTKAGPKEML PIVDKPIIQY VVEEAIAAGI THLVFVTSSS  60
   61 KRAIEDYFDS NYELETRLRS SRKLDALKLI QNLLPKEVRI SYVRQAHPLG LGDAVLSAKH 120
  121 VVGDQPFAVL LPDDIIDCGE KSCLQLMMEA FEKHQRNIIA VEQVPLNQTD KYGIVSVVDE 180
  181 HQVKRITGMV EKPPLGSALS DWAVTGRYIL SPRVFDHLDA ISCGVGGEIQ LTDAIVALLQ 240
  241 EEQVLAFPFK GHRYDCGSRL GFLQATIAYA LKRPEFKEPL REYLFKLLGS ECVGG

Type	Start	End	Confidence
Signal Peptide	1	24	0.71
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	295	0.99