YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVTNQLVQ DLAEPIITID KKHLPVFIGA QDYFKGFKEW NLWLYMAYAE IRRRYKRTLI  60
   61 GPFWATLSIA IFIGSMGFLL ATLWHREIRS YLPFFASSYV VWIFFSTTLS ESCTTFIANE 120
  121 SYMKQIALPY SFYAFLVVSR NVMVFFHHFV VFLTVALIFH LHITHNTWLV IPGFALLILN 180
  181 CSWIAIALGL VCARVRDIQQ IVTSILQIAM FITPIFWSES QLGHGKIALL IINLNPIYHF 240
  241 ISVVRYPLMG EPASLVSWMA NILILVVGWT FTMVYLGRNY NKLIYWL

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	83	0.91
Non-Cytoplasmic	84	97	0.77
Transmembrane Helix	98	118	0.85
Cytoplasmic	119	143	0.74
Transmembrane Helix	144	163	0.84
Non-Cytoplasmic	164	169	0.80
Transmembrane Helix	170	192	0.92
Cytoplasmic	193	200	0.78
Transmembrane Helix	201	218	0.88
Non-Cytoplasmic	219	226	0.68
Transmembrane Helix	227	246	0.63
Cytoplasmic	247	254	0.54
Transmembrane Helix	255	277	0.90
Non-Cytoplasmic	278	287	0.62