YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541136, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.85
Transmembrane Helix	7	26	0.94
Cytoplasmic	27	43	0.84
Transmembrane Helix	44	63	0.93
Non-Cytoplasmic	64	69	0.61
Transmembrane Helix	70	89	0.82
Cytoplasmic	90	97	0.81
Transmembrane Helix	98	120	0.86
Non-Cytoplasmic	121	129	0.72
Transmembrane Helix	130	149	0.93
Cytoplasmic	150	156	0.84
Transmembrane Helix	157	177	0.90
Non-Cytoplasmic	178	184	0.74
Transmembrane Helix	185	204	0.93
Cytoplasmic	205	210	0.88
Transmembrane Helix	211	230	0.95
Non-Cytoplasmic	231	242	0.79
Transmembrane Helix	243	262	0.94
Cytoplasmic	263	283	0.87
Transmembrane Helix	284	308	0.88
Non-Cytoplasmic	309	317	0.74
Transmembrane Helix	318	335	0.93
Cytoplasmic	336	355	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELIKSGLIA FVASLFCIWL LRPLAIRIGF VDRPNDRKWH EREVPMIGGI AMFFSFCFAL  60
   61 LTLSTSLLPY RGMLAGSSIL VLMGVVDDFS DLSSKLRLFG QLFAALLMII WGNVVLSNLG 120
  121 NLFFLGDLKI GLWAIPITVI VVLANINAMN MIDGQDGLAG GVALGQALLL LLVSVKLHQV 180
  181 SDFRLLFILI ILLIAFLGFN MRLLWRKEAS IFMGDSGSTF IAFLLAWFAI DLSQQNSALI 240
  241 KPMTILWIMA FPLFDLINVI VLRVRQKKSI IVASRDHFHH VLHVAGLNTS LSTLLLCALS 300
  301 LLLGIFGLAL NYFTVSDGWQ FILWVGALFC YIYIVELTRK PIIDNEIDII ANPEG