YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29653701, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTHEHHHHK HHTSHRVLGW AILLTLGFAL VEALGGYFAH SLALLGDAGH MASDAVALGI  60
   61 AAFASWIALR PPSHKHSYGF GRAEVIAAWA SSLLMVIIAL AVIVEAIKRI QQPSSVHSVP 120
  121 VMLIAVFGIL LNVLLAGLIS RSEKTLNIRA VLLHVVSDIV GTCAVLLSGI VIFFSHWALI 180
  181 DPLLSVLIGI LIIISSVRLW RESMTVLMEG VPAHLNIKQV SQTMVRFEGV KAVHDVHIWT 240
  241 LSSGVTALSA HVNIKNITSW DDVLLGLKST LKQQYDIDHI TLQPEADNEE CTPCYKL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	39	0.91
Non-Cytoplasmic	40	49	0.77
Transmembrane Helix	50	69	0.95
Cytoplasmic	70	84	0.90
Transmembrane Helix	85	107	0.90
Non-Cytoplasmic	108	115	0.91
Transmembrane Helix	116	139	0.88
Cytoplasmic	140	149	0.91
Transmembrane Helix	150	173	0.91
Non-Cytoplasmic	174	178	0.74
Transmembrane Helix	179	200	0.90
Cytoplasmic	201	297	0.96