YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540872, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	69	0.89
Transmembrane Helix	70	95	0.79
Cytoplasmic	96	117	0.94
Transmembrane Helix	118	139	0.89
Non-Cytoplasmic	140	148	0.88
Transmembrane Helix	149	169	0.95
Cytoplasmic	170	177	0.87
Transmembrane Helix	178	199	0.89
Non-Cytoplasmic	200	210	0.81
Transmembrane Helix	211	232	0.94
Cytoplasmic	233	265	0.92
Transmembrane Helix	266	286	0.88
Non-Cytoplasmic	287	310	0.85
Transmembrane Helix	311	332	0.91
Cytoplasmic	333	367	0.95
Transmembrane Helix	368	388	0.91
Non-Cytoplasmic	389	393	0.75
Transmembrane Helix	394	413	0.89
Cytoplasmic	414	442	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTKLGTSL SQGGLSELKR RLLFVLIGII VYRLGAYIPV PGLDPSRLAA LFHQHETGFL  60
   61 GMFNMFSGGA LSRMTIFALG VMPYISSSII VQMYSQISPK MQALRKEGEA GRRKINQYTR 120
  121 YGTVILSLLQ SAFMTKWLVS SGTVINPNLG FYFTAIVTLV TGTMFLMWLG EQMTERGVGN 180
  181 GISLIIFASI ASRFPAAIGQ VFTQVRQGQM SVLILLLLIA VIVLVTLVVV FFERAQRRIT 240
  241 INYAKRQQGR KLYAAQSSHL PLKINMAGVI PVIFAQSIIL FPGAVAKFMS SVKGLGWLND 300
  301 VSLALSYGQP AYIVVFAIAV IFFSFFYTAL VFNPKETADN LKKSGAFIPG IRPGEQTANY 360
  361 IDKVMTRLTL VGSVYLALVA LLPQFLILAW NVPFYFGGTS LLIVVVVIMD FMAQVQAHLM 420
  421 SHQYESLMKK SGLKGSKFGL IR