YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29653571, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.87
Transmembrane Helix	18	38	0.93
Cytoplasmic	39	56	0.85
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	97	0.80
Transmembrane Helix	98	119	0.91
Cytoplasmic	120	129	0.78
Transmembrane Helix	130	150	0.95
Non-Cytoplasmic	151	189	0.83
Transmembrane Helix	190	212	0.93
Cytoplasmic	213	221	0.77
Transmembrane Helix	222	241	0.93
Non-Cytoplasmic	242	394	0.87
Transmembrane Helix	395	415	0.94
Cytoplasmic	416	423	0.84
Transmembrane Helix	424	447	0.88
Non-Cytoplasmic	448	472	0.79
Transmembrane Helix	473	497	0.80
Cytoplasmic	498	516	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPTDELVNL SRFQFALTAL FHFLFVPLTL GLTWILVIME SVYVKTGNVI YKDMTQFWSK  60
   61 LLAINFAMGV LTGITLEFEF GQNWAYFSRM IGGSFAPVLA VEGITAFMLE ATMFGLFFFS 120
  121 WNKVGKKAHL GITFLMALGA SLSIVNILAA NSWMQKPTAT TFNYQNMSLE LHSIIALYLN 180
  181 SLAQIRISHV AFGGFLTGSI FVMGVSAFYI LVGRDIEFAK RSFAVGVGFG LICALAVAFY 240
  241 GDQNGLQVAK YEPEKMAAIE AQWQTQKPPA SWSLIAFPSQ KEQKNYFVIS IPYALSLIAT 300
  301 HSLKGVVPGA LELMKGYKQR IENGMLAYGA MRKMLEAKAT PQDRSLYNRY KNDLGFGFLL 360
  361 DRYNPHVVNS TPAEIEAATR DTIPNMAIAF WSFRFMFGLW GLMLLLLIFG FFYCYRNTLT 420
  421 QHRLFLRCAL YAIPLPFLAA EFGWILAESG RQPWSVHEIL PTFMSVSTIS VSTVMTSLLG 480
  481 YIAFYSSLFV IELFLMFKYA RRGPSSLETG RYYFER