YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540783, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSNDIYLN RFYNNKHHIN DKNTVDSLAD SASQTILQGQ IGVFCTGMDF TNLQPPKSRQ  60
   61 PSDNTLYIKL LHRFVTFSRI IISCVEGAVI AGGMGLVASS DLVVATSQSQ FSLSEAIWGL 120
  121 LPVCVTPYLI RRVGFQAAYR LGFTTETIDA KEAYRLQLID LLSDEPLKKF TPMSCALAVL 180
  181 IYARLKD

Type	Start	End	Confidence
Cytoplasmic	1	76	0.95
Transmembrane Helix	77	98	0.87
Non-Cytoplasmic	99	115	0.72
Transmembrane Helix	116	130	0.82
Cytoplasmic	131	187	0.80