YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29653512, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYWKNRIR SKNILDLFRQ LNVLINAEIP LAQALALLAG GSHSGSLRQL ILAIWSKIEN  60
   61 GLSLSETLKI YPRYFHTVHH EIIHAGEQSG KLGELLKLLI HYEEGLFIFK KKIQKAIRYP 120
  121 LTVLSIALGV TIGLLEFVIP QFQNAFSEFG SQLPFFTQVI INLAHNVRAY GLLIFFSFSL 180
  181 FLFVFVYAKK HSDKFSKSVD HALIKIPLIG KGIQNIMITL WIKVLATLSA AGIPLNKALI 240
  241 TANHIIRNHA LRQALDKLPC WISEGVSFST AIERCGFFPH QAIQIIHIGE NSGTLNEMLN 300
  301 KVAVIYQEEI DERYDRLSEC LEPAIMIVLA LLIGGLIIAM YLPVFRIGSA L

Type	Start	End	Confidence
Cytoplasmic	1	118	0.86
Transmembrane Helix	119	139	0.94
Non-Cytoplasmic	140	166	0.91
Transmembrane Helix	167	188	0.92
Cytoplasmic	189	322	0.68
Transmembrane Helix	323	345	0.90
Non-Cytoplasmic	346	351	0.58