YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540773, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIISFLQFH FYITIVAIAV IGLIVGSFLN VVIVRYPTLL AARWRRECQE YLNLPVEPKP  60
   61 KFNLATPRSQ CPRCKKTLKI RHNLPLISYL TLRGRCAYCH EKISPLYPIV ELLCAILSVA 120
  121 IVIRYQISWQ ALAGLLLTWV LIVLFFIDLK TQLLPDAITL PTLWFGLSLS LFYMFVSPYQ 180
  181 AIFGAILGYG LLWITAAFYQ LIRKKEGMGR GDFKMVSMLG AWFGPGIVLN VLLLSVFLGL 240
  241 ITSFMLLALK KISVKQPIPF GPFIAVAGWI SLLSGPVLIH KLISYL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	102	0.93
Transmembrane Helix	103	123	0.87
Non-Cytoplasmic	124	128	0.73
Transmembrane Helix	129	149	0.90
Cytoplasmic	150	156	0.80
Transmembrane Helix	157	176	0.90
Non-Cytoplasmic	177	180	0.81
Transmembrane Helix	181	202	0.90
Cytoplasmic	203	218	0.88
Transmembrane Helix	219	242	0.89
Non-Cytoplasmic	243	259	0.75
Transmembrane Helix	260	280	0.91
Cytoplasmic	281	286	0.67