YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETKHPRVR GIYLLPNLFT VGAMFAGFYA IVAGMKGHYE SAAIAIFIAM VMDTLDGRIA  60
   61 RLLHAQSEFG VQLDSLSDML SFGIAPALVM YSWSLAVLGK PGWIAAFIYA ACTALRLARF 120
  121 NVQVKKVDKR YFQGLPTPSA AGLVASIIWV CNVFDVAGES IALPLSVVAI LLGLLKVSTI 180
  181 RYRSFKDFQL QNRVPFVVIL GVVLIIALIA FDPPDILLVI FFLYVISGPI GTLWSLHKRR 240
  241 RQKKKLRRQK NQKN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	33	0.93
Non-Cytoplasmic	34	40	0.77
Transmembrane Helix	41	60	0.87
Cytoplasmic	61	75	0.78
Transmembrane Helix	76	95	0.87
Non-Cytoplasmic	96	101	0.70
Transmembrane Helix	102	120	0.92
Cytoplasmic	121	130	0.91
Transmembrane Helix	131	151	0.92
Non-Cytoplasmic	152	159	0.74
Transmembrane Helix	160	180	0.92
Cytoplasmic	181	191	0.88
Transmembrane Helix	192	211	0.94
Non-Cytoplasmic	212	216	0.86
Transmembrane Helix	217	237	0.95
Cytoplasmic	238	254	0.98