YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540717, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.74
Transmembrane Helix	7	27	0.77
Cytoplasmic	28	40	0.79
Transmembrane Helix	41	64	0.88
Non-Cytoplasmic	65	75	0.75
Transmembrane Helix	76	97	0.89
Cytoplasmic	98	105	0.77
Transmembrane Helix	106	125	0.91
Non-Cytoplasmic	126	131	0.76
Transmembrane Helix	132	151	0.90
Cytoplasmic	152	172	0.94
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	206	0.63
Transmembrane Helix	207	230	0.81
Cytoplasmic	231	237	0.91
Transmembrane Helix	238	261	0.88
Non-Cytoplasmic	262	273	0.81
Transmembrane Helix	274	291	0.93
Cytoplasmic	292	297	0.83
Transmembrane Helix	298	319	0.91
Non-Cytoplasmic	320	322	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVILKIIVE LIVGAGLLAF GAERFITASA ALARHLKIPS LVIGIILVGF GTSFPELIVS  60
   61 AIAAFHGKTQ ISIGNVVGSN IANIGLILGV VALIIPIEVH SRLVKWELPA LIIISFVIGA 120
  121 FLWNGYLSRP EGIILILLLI LHLYWMSITS LKKKVAPLQE LPQEKLQMSA KKSVIWWFLG 180
  181 LALLFISSEL LVDGAVGAAQ LLGISDLVIG LTIVTVCTSL PEFAATLMGV LKKEHDIAIG 240
  241 HIIGSNIFNS LAVLAMPALI APGRFPSSVM RRDYPAMMIF TIGLWLFTIL TSRRGGGIGR 300
  301 VFGIIFLLGY ISYVVLLFIS ST