YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA_COXBU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	38	0.97
Non-Cytoplasmic	39	45	0.78
Transmembrane Helix	46	68	0.89
Cytoplasmic	69	83	0.95
Transmembrane Helix	84	108	0.86
Non-Cytoplasmic	109	114	0.67
Transmembrane Helix	115	133	0.93
Cytoplasmic	134	141	0.76
Transmembrane Helix	142	160	0.90
Non-Cytoplasmic	161	164	0.69
Transmembrane Helix	165	185	0.84
Cytoplasmic	186	207	0.86
Transmembrane Helix	208	229	0.86
Non-Cytoplasmic	230	234	0.78
Transmembrane Helix	235	255	0.92
Cytoplasmic	256	265	0.87
Transmembrane Helix	266	285	0.89
Non-Cytoplasmic	286	287	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINLRQQMPH YLRLMRFDKP VGIFLLLWPT LWAVWIAAKG APSFKIAVIF IAGSVVMRAA  60
   61 GCIVNDFADR HLDKHVQRTQ MRPLASGSVS VTEAMLLFAV LSLIAFTLVL LLNRLTVELA 120
  121 VIGILLALVY PFLKRFTHLP QLWLGVAFSW SIPMAFAATV GHVPAVAWLL FFAAVLWPIV 180
  181 YDTQYAMIDR EDDVKVGIKS TAILFGRYDR LMIGLLQGSV LLTFGLLGWY LRFNYWFYLG 240
  241 LLVALGLMCY QQFLIRHRKP PDCFAAFRNN NWVGFFIFLG ILLTYRN