YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29653393, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKWEKIPYG FDESALKRRR QWMKEQGLNW ESCSPELSGS MRGLIENHIG QIAIPLALAG  60
   61 PCVIDGTYAQ GTYYMPVATL EGTLTLSMSR GFYATAQCGG IQTQHIQQMI SRSPIFSFKD 120
  121 LNSLKVFSTW VTEHFNTIKN VAEQSTQYGK LIRIDQYQVH DHLILDFVYT TAEAAGQNMT 180
  181 TFCTHNACEF IRGTLAEHLS FTYLLESSFN ADKKPSTKTL LAGRGHKVIA SCVLSAAVCK 240
  241 RTLGISPRQL AEGMRVARYA STLANIVGIN LHVANALTAI YLATGQDCAC VSENAVAFFD 300
  301 ILYLPESDEA KCVLTMPSIT VGTVGSGMQL PQQQSNLKLI NCVGKHSSKR LAELITASAL 360
  361 ALEISLAAAI GANKFAKAHM IFGRKKKKRK VHEKI

Type	Start	End	Confidence
Non-Cytoplasmic	1	356	0.89
Transmembrane Helix	357	376	0.63
Cytoplasmic	377	395	0.60