YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29345313, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.98
Transmembrane Helix	109	130	0.88
Non-Cytoplasmic	131	154	0.83
Transmembrane Helix	155	176	0.88
Cytoplasmic	177	183	0.75
Transmembrane Helix	184	204	0.86
Non-Cytoplasmic	205	219	0.82
Transmembrane Helix	220	241	0.63
Cytoplasmic	242	250	0.65
Transmembrane Helix	251	276	0.83
Non-Cytoplasmic	277	285	0.63
Transmembrane Helix	286	312	0.79
Cytoplasmic	313	333	0.55
Transmembrane Helix	334	358	0.83
Non-Cytoplasmic	359	365	0.60
Transmembrane Helix	366	387	0.80
Cytoplasmic	388	394	0.58
Transmembrane Helix	395	417	0.87
Non-Cytoplasmic	418	434	0.55
Transmembrane Helix	435	457	0.90
Cytoplasmic	458	643	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYAKLASDI ILAVGKDNLI AAAHCATRLR LVLKDNTKVN QKALDENPNV KGTFKIDGQY  60
   61 QVIIGAGDVN FVYDELIKKT GLSELSTDDL KQIVDKNKKF NPIMALIKLL SEIFVPIIPA 120
  121 LVAGGLLMAL RNFLTAAGLF GPKSIEEMYP AIKGISSMIQ LMSAAPFMFL PILVGISAAK 180
  181 RFGANQFLGA AIGMIMTTPD LGGATEYWNI FGYHVAQTNY AYQVIPVLAS VYLLSILEKY 240
  241 FHKKLPSSID FTFTPLLSVI ITGFLTFTVI GPTMLLLSNG ITDAIVWLYN ATGFIGMGIF 300
  301 GGTYSLIVMT GLHQSFPAIE TQLLSAWTNG IGHGDFIFVV ASMANVAQGA ATFAIWFLTK 360
  361 NSKTKSLASS AGLSALLGIT EPALFGVNLK YRFPFFCALI GSGIAAAITG LLKVVAVSLG 420
  421 SAGFLGFLSI NATSIPFYLL CELISFSVTF AITYFYGRTR SSSIFAAEAI AEQTSVDTSE 480
  481 INTNQIANAD EPTTVETIVS PLAGEITTLG SVNDPVFSSE SIGKGIAIKP NGNTIYSPVD 540
  541 GIVQVVFETG HAYDLKSNTG AEILIHVGID TVSLNGKGFT KKVGAKQKVK KGEVLGTFDS 600
  601 TVITNSGLDD TTMVIVTNSK DYSEVIPITK NIVTEGAALL TIK