YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29344968, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVQAILVGI WAGIAGVDKL VLQTHIHRPI VTGLIVGLIL GDVNTGLITG ATLELVWIGA  60
   61 VAIGGAQPPN VVIGGVIGTA LAIITKSDPQ VTVGLAVPFA VAAQALITLL YTAMSPIMHK 120
  121 FDVYAKKADT RGIERMSSFL PIVLFICYFF VVFLCIFFGA DKASSFISIL PEWSIHGLSV 180
  181 AGGMMPAVGF AMLLKTMWET SYVPFFIFGF VMAAYLGLDT LAVAGLAVAI ALYEFYAQRN 240
  241 NTVTASNNNG GFEEDGI

Type	Start	End	Confidence
Cytoplasmic	1	29	0.56
Transmembrane Helix	30	53	0.78
Non-Cytoplasmic	54	59	0.49
Transmembrane Helix	60	84	0.74
Cytoplasmic	85	90	0.55
Transmembrane Helix	91	114	0.85
Non-Cytoplasmic	115	137	0.58
Transmembrane Helix	138	160	0.91
Cytoplasmic	161	172	0.54
Transmembrane Helix	173	194	0.91
Non-Cytoplasmic	195	204	0.50
Transmembrane Helix	205	233	0.80
Cytoplasmic	234	257	0.58