YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238830163, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKQTTDKR LSWFWRWFLN NQVVTALLIV LLVLLIILTF TKVSYLFKPV WQFFGVVGLP  60
   61 VIMAGILYYL LNPIVDYLEK KQISRVWSII GLFILIVALL IWGGIVIVPK IREQSVSFVN 120
  121 HFPQYIDTID QKSQEILSDP LFAQFREQLE AAGDKVVSSL GTIIKNVSTF TVQGIGNFFG 180
  181 AVATIFVAII TMPFILFYLL KDGKNLAPYL MKFLPVKMRK PTLKVLAEVN DQVSSYIRGQ 240
  241 LTVAFAVAIM FMIGFSVIGL DYAVTLGIAA GFLNLIPYLG SFLAMIPAVF LGIVSGPALL 300
  301 IKVLIVFAIE QTVEGRFISP LVLGSQLSIH PVTILVVLLT SGKLFGIVGV ILGIPVYAAA 360
  361 KVIITHIFEW YQIVSGLYDE DKPDQQEST

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	40	0.92
Non-Cytoplasmic	41	49	0.84
Transmembrane Helix	50	71	0.93
Cytoplasmic	72	85	0.86
Transmembrane Helix	86	108	0.91
Non-Cytoplasmic	109	177	0.97
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	241	0.96
Transmembrane Helix	242	264	0.88
Non-Cytoplasmic	265	281	0.69
Transmembrane Helix	282	306	0.85
Cytoplasmic	307	316	0.82
Transmembrane Helix	317	339	0.77
Non-Cytoplasmic	340	343	0.63
Transmembrane Helix	344	365	0.84
Cytoplasmic	366	389	0.79