YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238828806, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITSKTKTA NKLRRKNTWT ALSFIAPNFI GFFLFTLIPV ICSLILAFMS WDSFSTPEFV  60
   61 GMKNFTKMIH DDTFWISLKQ TFIYTIGVVP LTLICSLGLA ILLNRKIRGM KFFRTAFFFP 120
  121 YVTSLVAIAV VWNMLFHPTM GPINQFLKLF IENPPGWTSS STWALPAIII VSVWRFMGYY 180
  181 MILYLAGLQS VPRELYEAAS MDGAGKWNQF LNVTLPSLRP TTFFVTIMLV INCFKVFDLV 240
  241 QVMTGGGPGR ATNVLVYEIY NEAFVKFNFG YASAIAMVLF IIVLAITVAQ FKWNQHQEKV 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	49	0.88
Non-Cytoplasmic	50	81	0.96
Transmembrane Helix	82	103	0.96
Cytoplasmic	104	114	0.86
Transmembrane Helix	115	136	0.91
Non-Cytoplasmic	137	162	0.89
Transmembrane Helix	163	183	0.88
Cytoplasmic	184	219	0.90
Transmembrane Helix	220	239	0.80
Non-Cytoplasmic	240	268	0.84
Transmembrane Helix	269	291	0.89
Cytoplasmic	292	300	0.85