YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29375470, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.92
Transmembrane Helix	19	42	0.89
Non-Cytoplasmic	43	116	0.94
Transmembrane Helix	117	136	0.94
Cytoplasmic	137	147	0.78
Transmembrane Helix	148	168	0.88
Non-Cytoplasmic	169	174	0.74
Transmembrane Helix	175	192	0.97
Cytoplasmic	193	199	0.82
Transmembrane Helix	200	218	0.95
Non-Cytoplasmic	219	223	0.81
Transmembrane Helix	224	242	0.94
Cytoplasmic	243	249	0.84
Transmembrane Helix	250	269	0.93
Non-Cytoplasmic	270	402	0.98
Transmembrane Helix	403	425	0.89
Cytoplasmic	426	432	0.93
Transmembrane Helix	433	456	0.92
Non-Cytoplasmic	457	461	0.94
Transmembrane Helix	462	481	0.91
Cytoplasmic	482	506	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIKKYMNS AFEWLSRYIS PSLLAVLGIG LVTSILLFVY PINGLGDNGE YFRVLNSNSL  60
   61 YRVNGDSYDN VVYFVKDFSI MRYFNETTTH FVSTQQFFIT VAIWLNKLFY SQTLFDIRFL 120
  121 GFVYLSCFLV SIYILVRGLT EDVSLKKSYL ISLLVIFILG DTSYTIYFNS FYTEATSFLL 180
  181 SVSVLAFSVY FYRVTKPRTW LRRIVLVILA QAVVLLIGTT RQEYLLIIGV IIAGLGFFVY 240
  241 LSQRYQRLSM TAFLIALIGF TTLAAFIVPN DIYERDVYHS MTRGVMKDSK VPDKRMSEGG 300
  301 INPQYGLQKG RSYFEEYSPV SPTSEQMKKD FFDKTSFGWV LLNYLNYPSE LWQGLNSAVP 360
  361 NVYLVKPNNV GNFEKTTGRA PLEQSKFFMV YNRIKASFFP KNFAFYLLLG VILFGLYGVG 420
  421 LYRGLKRNEP RLVFRFFLMT GIYLNLLVVF ISTIIIDGDS DLVRHLFLVS VFLDFLLLQI 480
  481 VSDVIGKRMW QDTTPQVIGE VEGIEK