YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29342814, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKHFLLSF FVMMVTLLTF ISGTSAHAEG KKYTIGTDLT FAPFEFQDSK GKYIGIDVDL  60
   61 LDAIAKDQDF EVDLKPLGFD SAVQAIQSKQ IDGMIAGMSI TDERKKSFDF SDPYFDSGLQ 120
  121 LAVKKGNDKI KSYDDLKGKT VAAKVGTESA NFLEKNKEKY DYTIKNFDDA TGLYKALENG 180
  181 EADAIVDDYP VLGYAVKNGQ KLQLVGDKET GSSYGFAVKK GQNPELIKKF NAGLKNLKDN 240
  241 GTYDKILNNY LATGDETNTQ DAGEQMKKIT PKKEKYVIAS DSTFAPFEFQ NAQGDYVGID 300
  301 VDLVKRAAEL QGFTVEFKFI GFSSAVQAVE SGQADGMVAG MTITDDRKKA FDFSVPYFDS 360
  361 GIQIAVKKGN DKIKSYDDLK GKKVGVKIGT ESADFLEKNK KKYDYSIKYL DTTDALYSAL 420
  421 EIGEVDAMMD DYPVIGYGVA QNQPLATPIP REKGGSYGFA VKKGQNPELL EMFNEGLKEM 480
  481 KRTGEYDKII GTYVKDGNEA KEETADESTF VGFMQNNWKQ LLHGLWMTIL LTLISFVLAL 540
  541 IVGVIFGLFS VSPIKALRVL STIYVDLIRG IPLMVLAFFI YFGLPGVLGF NIPVFIAGII 600
  601 TLTLNASAYI SEIVRGGIKA VPVGQMEASR SLGLSYNRTM QKIILPQAIR IMIPSFINQF 660
  661 VISLKDTTIL SAIGLIELLQ TGKIIVARTL QSTMVYFVIA LIYLILITSL TKLAKNLEKK 720
  721 VN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle