YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29342746, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	54	0.89
Transmembrane Helix	55	77	0.85
Cytoplasmic	78	102	0.93
Transmembrane Helix	103	124	0.92
Non-Cytoplasmic	125	130	0.74
Transmembrane Helix	131	151	0.89
Cytoplasmic	152	166	0.74
Transmembrane Helix	167	184	0.94
Non-Cytoplasmic	185	188	0.70
Transmembrane Helix	189	209	0.87
Cytoplasmic	210	283	0.97
Transmembrane Helix	284	300	0.95
Non-Cytoplasmic	301	304	0.60
Transmembrane Helix	305	328	0.84
Cytoplasmic	329	346	0.90
Transmembrane Helix	347	369	0.89
Non-Cytoplasmic	370	376	0.72
Transmembrane Helix	377	396	0.93
Cytoplasmic	397	403	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEFFSQRLS RHFKKMSKYL RYILNDHFVL VCMFLLGGLG LYYSQLLKEL PRDFVWGRPL  60
   61 ILLGWLLLIQ VGKLATLTEE PDKVFLLPKE KQFAAYLKRA LRYSLLLPIV VSFLGSGLLM 120
  121 PLIVVTTGWS FQTFFLFLVM LVCMIYTHLS LQSYGLYHLS STTYRSWWFV WLISSLLIMT 180
  181 GAIYWTPWVG VIGGIILAVC LSSIWQNKMK QSFLDWEKMI QKEQNRMHRI YKFIQLFTDI 240
  241 PEVSSTVKRR KYLDPLLGVV KKTSENTYAY LFIRSFLRGS EYSGLLFRLI LVGGVLLFFL 300
  301 QEFWIALVVA LLFVYLIGFQ LIPMYTQFDY MVMTQLYPIS IEKKQAAIRR LISGALSVAA 360
  361 IIFGGIVCLR LGSLQNSLII LGALIVEVVI FTKMYVPMRL NKL