YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29342341, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNKLIFGRY IPGDSFIHRL DPRAKLLASF YFIGIIFLAN NWQSYVLIAA FTAFAISLSK  60
   61 ISARFFIRGV RPLLWLILFT VALQTLFTQG GEVYFQWGII SITQFGVTNG LFIFCRFVLI 120
  121 IFMSTLLTLT TAPLELSDAI EYLLRPLHVV KFPVHEVSLM LSIALRFVPT LMDETEKIMN 180
  181 AQRARGVDFG EGNLLQKMKA IVPLLIPLFV SSFNRAEDLA TAMEARGYQG GEGRTKYRIL 240
  241 HWHLRDTIVM FGFVLLTIGL FVLRT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	39	0.86
Non-Cytoplasmic	40	44	0.74
Transmembrane Helix	45	63	0.90
Cytoplasmic	64	72	0.73
Transmembrane Helix	73	91	0.91
Non-Cytoplasmic	92	104	0.68
Transmembrane Helix	105	129	0.74
Cytoplasmic	130	241	0.91
Transmembrane Helix	242	263	0.91
Non-Cytoplasmic	264	265	0.84