YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29340845, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLSVWAVA ALLMAACTPK AEKTTDSGLL QSNFQMEVDG KKTDLYTLRN KNNMEVCVTN  60
   61 FGGRIVSVMV PDKDGQMRDV VLGFDSIQDY VSKPSDFGAS IGRYANRINQ GRFTLDGTEY 120
  121 QLPQNNYGHC LHGGPQGFQY RVFDAVQPNP QELELTYTAE DGEEGFPGNI TCKVLMKLTD 180
  181 DNAIDIRYEA ETDKPTIVNM TNHSYFNLDG DAARNEAHLL TIDADYYTPV DSTFMTTGEI 240
  241 APVEGTPMDF RTPTPVGARI NDYDFVQLKN GNGYDHNWVL NTKGDITRKC ATLESPLTGI 300
  301 VLDVYTNEPG IQVYAGNFLD GSLTGKKGIT YNQRASVCLE TQKYPDTPNK PEWPSAVLRP 360
  361 GEKYMSQCIF KFSVNKN

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	377	0.99