YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29340694, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVSVLIPA YNEELSLPEL YSKLKEMMDS YAEYEWEILF VNDGSHDKTL EVIKFLRSQD  60
   61 ERINFVDLSR NFGKEVAMLA GFDYATGDCL VIMDADLQHP PHLIPEMLKY WEEGYDDVYA 120
  121 KRITRGKESL MRKYLSLLFY KLLQKTTRVE ILPNVGDFRL LDRCCVNALK QMRESQRYTK 180
  181 GMYCWIGFRK KEIKFEQEDR VAGTSSFNFF SLLSLAVEGV TSFTVAPLRI STFAGIIVSL 240
  241 VAFIYMCFIM FKTLIWGEVV QGFPTLMVVI LFLGGIQLLS LGVIGEYIGR IFNETKNRPT 300
  301 YIAREYNGVK Q

Type	Start	End	Confidence
Cytoplasmic	1	231	0.60
Transmembrane Helix	232	255	0.87
Non-Cytoplasmic	256	262	0.52
Transmembrane Helix	263	288	0.82
Cytoplasmic	289	311	0.59