YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29340366, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLSNSSVGR KVVMSVTGIA LVLFLTFHMA MNLVAIISAD GYNMICEFLG ANWYALVATA  60
   61 ALAALFIIHI IYAFWLTMQN RTARGSERYA VVDKPKTVEW ASQNMLVLGI IVIVGLGLHL 120
  121 FNFWAKMQLP ELMHNLDMHA DTLTLAYAAN GAYHIQQTFS CPVYVVLYLI WLFALWFHLT 180
  181 HGFWSSMQSL GWNNKVWINR WKCISNIYST IVVLGFALVV VVFFVKSLLC GGAC

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	36	0.84
Non-Cytoplasmic	37	53	0.85
Transmembrane Helix	54	76	0.93
Cytoplasmic	77	103	0.89
Transmembrane Helix	104	123	0.93
Non-Cytoplasmic	124	162	0.83
Transmembrane Helix	163	184	0.87
Cytoplasmic	185	203	0.79
Transmembrane Helix	204	225	0.91
Non-Cytoplasmic	226	234	0.69