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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29340236, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNIITFVA LIIGLICRAQ TVDENYYFKS LSSQNGLSQN TVSAILQDSK GFMWFGTKDG  60
   61 LDRYDGVSFR HFKYDRTNPR SLGNNFVTSL YEDVEGNIWI GTDVGVYIYY PEKDTFRHFV 120
  121 ELSDRNTRIE RAVAMISGDR QGRIWIASEA QNLFCYDLKE QSLRNYILTE HSLVSTNVKC 180
  181 LTVDNSGTIW IGFYGDGLFY SKDNLKTLHP YLSPVDNEET YNDDVVSKIV LGAYNCLYIS 240
  241 SLKGGVKELN LTSGKLRDLL LKDENNEAIY CRTLLVYTDN ELWIGTESGV YIYNLRTEKY 300
  301 THLRSSEYDP YSLSDNAIYS FCKDREDGIW IGSYFGGVNY YPRSYTYFEK YYPKGIENSL 360
  361 HGKRVREFCR DSQGILWIGT EDGGLNRFNL KTKDFSFFAP SAGFTNIHGL CLVDDKLWVG 420
  421 TFSKGLKVID TRSGVVLKTY QKNDSPRSLI DNSIFAICKT ATGDIYLGTM FGLVRYNKQS 480
  481 DDFDRIPELN GKFIYDIKED SAGNIWLATY ANGVYCYNVN DRKWKNYVHD DKDNTSLPYN 540
  541 KVSSVFEDSH RQIWLTTQGG GFCIFHPESE TFTSYNSTNG LPSDVVYQIV EDKEGQLWLT 600
  601 TNNGLVCFQP NTEAMKVYTT ANGLLGDQFN YRSSFEDENG MIYFGGIDGF IAFNPKDFSE 660
  661 NKNLPTVVIT DFLLFNKEVY ADEPNSPLEK SITFSDKIVL RADQNSFSFR ISALGYQAPR 720
  721 MNKLKYKLEG FDDEWLSVGE SPLITYSNLR YGHYIFRVKA ANSNGVWNSN EISLSIQILP 780
  781 PFYLSVWAYC IYVLLIIGCS VYLVLYFKRR TNRKHRRQME KFEQEKEREV YNAKIDFFTN 840
  841 VAHEIRTPLT LINGPLENIL LKKSVDSETR EDLNIMKQNT ERLLSLTNQL LDFRKTESQG 900
  901 FRLNFAECNI TEVLKETHKR FTSLAKQREL DFILNVPVQD FYAHVNKEAF TKIVSNLLNN 960
  961 AVKYAETYVH VYLEINGTGE NKMFYIRSVN DGVIIPNEMK EEIFKPFVRF NEKEDGKVTT1020
 1021 GTGIGLALSR SLAELHRGNL TMLESEEANV FCLSLPVEQD SVIKLASEHK SVEESKTVER1080
 1081 RIEQGESKTN RPVILVADDN QDMLSFVVRQ LEDNYIVLTA KDGLEALEVL DNQEVTLVVS1140
 1141 DVVMPRMDGF ELCKVVKSKL DYSHIPVILL TAKTNIQSKI EGLELGADAY IEKPFSVEYL1200
 1201 QACIANLINS REKLRQAFAQ SPFVAANTMA LTKADEEFMK KLNEIIQGNF HNPDFSMDDI1260
 1261 VDSLNMSRSN FYRKIKGVLD LSPNEYLRLE RLKRAAQLLK EGNGRVNEIC YMVGFNSPSY1320
 1321 FSKCFQKQFG VLPKDFAG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle