YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29339811, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHIIIAVIL TISNVFLGIA KPMKSQAEIY FAGGCFWGTE HFLKQIRGVE STQVGYANST  60
   61 VANPSYEQVC SGKTNAAETV KVVYDPEEVN LSLLLNLYFQ TIDPTSLNRQ GNDRGTQYRT 120
  121 GIYYINKADL STINQAIQAL ATQYNKPIAV EVEPLTNFYP AEVYHQDYLD KNPGGYCHIN 180
  181 LALFEMARKA NAPKPPTFQK PDDATLRKKL SAEQYAVTQK NATEPAFHNE FWNEHRPGIY 240
  241 VDITTGEPLF VSTDKFDSGC GWPSFSKPIQ KELIAEKKDT THGMIRTEVR SKTGDAHLGH 300
  301 VFTDGPKDKG GLRYCINSAS LRFIPKEKMK EEGYGEYLPL IK

Type	Start	End	Confidence
Signal Peptide	1	20	0.78
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	342	0.99