YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28900836, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.60
Transmembrane Helix	17	39	0.89
Cytoplasmic	40	47	0.58
Transmembrane Helix	48	69	0.91
Non-Cytoplasmic	70	89	0.62
Transmembrane Helix	90	117	0.72
Cytoplasmic	118	132	0.59
Transmembrane Helix	133	156	0.66
Non-Cytoplasmic	157	164	0.85
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	234	0.94
Transmembrane Helix	235	254	0.92
Non-Cytoplasmic	255	263	0.83
Transmembrane Helix	264	285	0.93
Cytoplasmic	286	294	0.92
Transmembrane Helix	295	315	0.93
Non-Cytoplasmic	316	336	0.87
Transmembrane Helix	337	357	0.88
Cytoplasmic	358	364	0.79
Transmembrane Helix	365	388	0.86
Non-Cytoplasmic	389	417	0.92
Transmembrane Helix	418	441	0.86
Cytoplasmic	442	443	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYLEFLFLL VMLYIGSRYG GIGLGVVSGI GLVIEVFIFK MPPTSPPVTV MLIILAVVTC  60
   61 ASILEAAGGL KYMLQVAERV LRKNPKRVTL IAPFVTYFMT FLLGTGHAVY SIMPIIGDVA 120
  121 LKNGIRPERP MAAASVASQI AITASPISAA VVYYLAQLSD IQHEITLLSI LLVTVPATLF 180
  181 GTLLMSLYSI KRGKELEDDE EYQERLKDPV WREKILNTTA TSLDEVLPTS ARNSVLLFIA 240
  241 SILVIVVIAM WPDIRTIVDG AKPISMAVVI QMMMLCFGGI ILLATKTDPR DVPNGVVFKS 300
  301 GMVAAIAIFG IAWMSDTYFQ YAMPQFKSGI VEMVTNYPWT FALALFIVSV VVNSQAATAR 360
  361 MMLPVGLGLG LDPALLIGLM PAVYGYFFIP NYPSDIATVN FDTSGTTKIG KWYFNHSFMS 420
  421 VGLIGVIGAC CLGYVLGQII IPS