YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28809223, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGVPREIL AGESRVAASP KSVEQLIKLG FDVVIESQAG VLASFDDAAY EAAGAKVVSS  60
   61 DEVWASGLIL KVNAPIVDEE KGIDEIALLQ DGATLVSFIW PAQNAELMEQ LSSKNINVLA 120
  121 MDSVPRISRA QALDALSSMA NIAGYRAVVE AAHEFGRFFT GQITAAGKVP PAKVLVAGAG 180
  181 VAGLAAIGAA GSLGAIVRAF DVRPEVKEQV ESMGAEFLTV DFQEDSGSGD GYAKEMSDDF 240
  241 NKKAAELYAE QAKDVDIIIT TALIPGRPAP KLITKEMVDS MKAGSVIVDL AAANGGNCEY 300
  301 TVKDQVIMTD NGVKIVGYTD MVGRLPTQSS QLYATNLVNL LKLLCKEKDG NINIDFEDVV 360
  361 LRGVTVIKEG EITWPAPPIQ VSAQPQAKQA QPVKKEPKVE EPTSPTKKLI GLVAAVGAFA 420
  421 WIASVAPAAF LSHFTVFVLA CVVGYYVVWN VTHALHTPLM SVTNAISGII VVGALLQIGQ 480
  481 GNGVVSFLSF IAVLIASINI FGGFTVTKRM LEMFRKDK

Type	Start	End	Confidence
Cytoplasmic	1	134	0.62
Transmembrane Helix	135	149	0.40
Non-Cytoplasmic	150	174	0.72
Transmembrane Helix	175	197	0.77
Cytoplasmic	198	407	0.92
Transmembrane Helix	408	425	0.88
Non-Cytoplasmic	426	429	0.68
Transmembrane Helix	430	449	0.91
Cytoplasmic	450	458	0.73
Transmembrane Helix	459	478	0.93
Non-Cytoplasmic	479	485	0.74
Transmembrane Helix	486	506	0.95
Cytoplasmic	507	518	0.91