YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|260364278\|ref...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTSSQTHQ DFSPKEMMAE AEKFALSKAN KTSSMTLGLA IMAGAFIGLA FLFYITVTTG  60
   61 SANTGWGLSR LAGGIAFSMG LILIVICGGE LFTSSVLSSI SWANKQISFG KMLSIWGKVY 120
  121 IGNFIGAMFL LALVTAAGLY QMDAGQWGLN ALNIAQHKLH HTLLQAFALG VLCNLLVCLA 180
  181 IWLTFSSANA MTKALMTILP VAMFVSSGFE HCVANMFMVP LGIVIANFAP ESFWASVGVP 240
  241 ASQYADLNVA HFISANLIPV TFGNIVGGAV LVGLANWCIY RRPELKAANV SSITNTTQLS 300
  301 SVKEITMKNA SFVKDIMNPK PVTLSVEMPV AAALDTLLDN NLTSAPVVDL HNRLVGFFSA 360
  361 HDVMVELWCQ DYIPVKDQKV VDLMSRDVVA IDASDRLVDV VEFLCIDKEQ LYPTSSMGIA 420
  421 TRLTSLSLEE RAKSMKVSKP QVLPVLENGQ MVGVVTRQEV LKALRPVFGE RLNLVEDKAL 480
  481 ETA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.98
Transmembrane Helix	35	57	0.91
Non-Cytoplasmic	58	74	0.84
Transmembrane Helix	75	98	0.88
Cytoplasmic	99	118	0.86
Transmembrane Helix	119	140	0.94
Non-Cytoplasmic	141	162	0.93
Transmembrane Helix	163	185	0.92
Cytoplasmic	186	200	0.73
Transmembrane Helix	201	226	0.74
Non-Cytoplasmic	227	256	0.86
Transmembrane Helix	257	279	0.89
Cytoplasmic	280	483	0.97