YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28808630
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.56
Transmembrane Helix	4	22	0.55
Cytoplasmic	23	28	0.60
Transmembrane Helix	29	47	0.91
Non-Cytoplasmic	48	53	0.80
Transmembrane Helix	54	73	0.91
Cytoplasmic	74	84	0.87
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	111	0.84
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	149	0.85
Transmembrane Helix	150	170	0.92
Non-Cytoplasmic	171	199	0.95
Transmembrane Helix	200	220	0.96
Cytoplasmic	221	231	0.85
Transmembrane Helix	232	252	0.85
Non-Cytoplasmic	253	256	0.52
Transmembrane Helix	257	275	0.79
Cytoplasmic	276	285	0.71
Transmembrane Helix	286	307	0.86
Non-Cytoplasmic	308	313	0.64
Transmembrane Helix	314	336	0.92
Cytoplasmic	337	343	0.79
Transmembrane Helix	344	365	0.89
Non-Cytoplasmic	366	376	0.67
Transmembrane Helix	377	396	0.94
Cytoplasmic	397	652	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGIFLQAFV YLVAAVIAVP LAKRLGLGSV LGYLIAGVVI GPIIGLVGEE TTTIQHFAEF  60
   61 GVVMMLFLVG LELEPKMLWA MRNRLMGLGG LQVGGTVAAI MGIALYFEQP WTIALAIGLI 120
  121 FALSSTAIVL QTFSEKGLTK TEGGKNAFSV LLFQDIAVIP MLAFIPLLAL PELVEQAQNA 180
  181 VQTAAQHHDD LNLVADLPGW AYGIVITASI AIVVVGGHFL SRPLLKYVAS SGLREIFTAT 240
  241 ALMLVIGIAA LMSLVGLSPA LGTFLAGVVL ANSEFRHELE SNIEPFKGLL LGLFFITVGA 300
  301 GINFSVLFGD FWLIMALTIG VMVLKALVLF ILALIFRVKG SNRWLFTLSL AQAGEFGFVL 360
  361 LSFSVQNHVI PFELSQTLAL VVAISMFLTP GLFILFDRVI LPRFETQSNE RESDTIEETG 420
  421 TVIIAGIGRF GQIVNRLLVS NGVTTVVLDH QANQVDNMRQ IGTRAYFGDA TRPDMLHTAG 480
  481 IEHAAALVVA IDNQESSVEL VKYVKHTYPK VKIIARAFDR GHGYLLRQAG ADVIESETYH 540
  541 SALEMGGHAM KALGIHPFFV EQQKDTYKRV EARKSEMLYQ AWEDDSEGER FDNNFRELFI 600
  601 QLEEKMAEEM RKDRHDKLSR SERGWTPPPK GYAENFDGEN VQDITPPKEE AI