YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28808173
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	28	0.78
Cytoplasmic	29	37	0.70
Transmembrane Helix	38	60	0.85
Non-Cytoplasmic	61	67	0.77
Transmembrane Helix	68	89	0.85
Cytoplasmic	90	95	0.76
Transmembrane Helix	96	120	0.83
Non-Cytoplasmic	121	158	0.51
Transmembrane Helix	159	181	0.83
Cytoplasmic	182	223	0.64
Transmembrane Helix	224	241	0.60
Non-Cytoplasmic	242	252	0.69
Transmembrane Helix	253	272	0.91
Cytoplasmic	273	283	0.83
Transmembrane Helix	284	304	0.91
Non-Cytoplasmic	305	312	0.74
Transmembrane Helix	313	336	0.91
Cytoplasmic	337	344	0.86
Transmembrane Helix	345	365	0.88
Non-Cytoplasmic	366	380	0.80
Transmembrane Helix	381	404	0.87
Cytoplasmic	405	408	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHVISIGPQ ESFLVAICVL FLGQFINTKL PILKKFNIPE PIVGGLVIAC VITAMHFNGV  60
   61 DLSFDLPLQN TFMLMFFATV GLAANYTQLI KGGAKVFIFL AVASAYILIQ NAVGVSLATA 120
  121 LGLDPLMGLI AGSITLSGGH GTGAAWSQTF QDMYGLHNVL EVAMASATFG LVIGGIIGSP 180
  181 VAQRLIDKNN LESEYGRTNQ SHQRFPELVT YNEHEEDRVT AKKVVESLSI ILLCVTGAGY 240
  241 LENWVSSFGI KWLMIPDFVY ALFIGVVITN IMEVTKVRKV DLETVDILGT VSLSLFLAMA 300
  301 LMSLKLWNIF DLAIPFLIIL AVQSVILAVF AYYVTFRVMG SNYDAAVISS GHCGFGLGAT 360
  361 PTAVMNMGSI VNRFGPSPQA FMVVPIVGAF FIDIVNLVIL QGCIAFIK