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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32250969
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYATLLEK TRVPQPSIQR FAVISVFSKL RSAPEQFGSE AEAGREAISF CLTSESITVV  60
   61 DQSVHELCRL VSDSVLDLSR GLLELQSALE GCDSKLVSLF VKGLGFLIRI GYERNNGNWK 120
  121 FNSTENHPFV RIQSSRVETQ TELLHQVSLF VMHNRRLGMV GVCEFLEPFL NFTILRIPLS 180
  181 DSSSSLFARE LISSMASLCC SSRHEALPIF RLLMRCLKYI PGNNLEVIVK ILVDAYTVVV 240
  241 RDLVGTGLEV TEVHLLGVQL VDGVLFLCAS PHVQTTEQES VIESLKHLLA VQKDLGLAYS 300
  301 HDLSLVVLSL VFMLAKSTVE HEQLCILKFL LFLLKWKTES ENLSVKDAAG SSVESLLLFP 360
  361 ITALMSSPSK SIKVAASKVL SIVENFLVTV SNAPKIEVHT SKGDSPLSRV GSVVFRFMQQ 420
  421 LWHQNDYTPS TSSFLRVAYT NGSEKQETYL GPVTWNSLLR EHAERFWDKK KLSASFCLSQ 480
  481 EIPILLGAVA GVMVMHPSLG ADAIGSLTII GGIDSKMSVP LLLAVLYFSN LLSRTNVPCQ 540
  541 SLLSKLLGLL PSLAAQQVMI PLVVQTITPM LRKDAKGLLY ATAIRLLCQT WVVNDRAFSS 600
  601 LQEVLRPKGF IEYISERHIC ISMAASIHDV CKRHPDRGVD LILSVQACIE SQNCPVRALG 660
  661 FQSLSHLCEA DVIDFYTAWD VIKKHAQRIK LDPLLAYSVC HLLKWGAMDA EAYPEDAESV 720
  721 LNILWEIGSS MQKPHDSQWT KARVSAIVAL GQYEVSFMEN KFSDFNKNCT YLLFSETNAE 780
  781 ILNALEDLSI KIMIHEHSVR RRYVREKKVP GSKIEKLLDV IPQVIFPAGK EIKTGELPGA 840
  841 ALLCLSYNPR DVKFGSSRSF HDVHGQYEEA FRVVVKSLQL SRNISLALIS LQSLKAFLRR 900
  901 WMRANILSID ATTKELSSDK TSKAANNIMK SLVHMAEEAL PRCAENIALA LGALCAALPA 960
  961 ASHNIKASAS KFLLSWLLEH EHEHRQWTAG ISLGLISSSL HVTDHKQKFQ NISGLLEVLC1020
 1021 SSKSTLVKGA CGVGLGFSCQ DLLTRTEASA SSDIDSDSYR NQEERLLGRI VRLLSSILHG1080
 1081 FLHTPCDILE SLSALFPPGE EDNVIGLPQL LDESSDDFDD DTWGIAGLII GLGMSVGAIY1140
 1141 RAGKKDAVVK IKNLIVSWIP YADSLKQTSG SNSKVSVRLF SVGSCLALPI VITFCQKVEL1200
 1201 FDAHEVDDII GCFKDLISEL LIVRKSGALR KRLLMASCIG AGDLLGSVLN EGIHPVKIES1260
 1261 VKELLELFKK CYSGLYPPVA HFGGMLGVVN VLGAGAGNLV YSHPRPRAPP ASSEENEISY1320
 1321 VSGPLLSNAY FTQQLTPVVQ EIFLIAQNTK DRQLQHYAAW AISILRTYMR SGESSSLSNE1380
 1381 NQSDDSDRNS ISHNVPEHTM VMKLAQGLTN PSFPLAGSPL NIGTMASALR CLSHAPRLPN1440
 1441 LDWGATIRRL MKQETQTDVT QSGDVPKEIT LREECFKFSL AHASEFDELL AFLDELSELS1500
 1501 RFKALEESLQ SCLLCHLGGL MRIFSGSRMN KLFDDVSCFV VSLSSDQTYS CDQKSSLRVS1560
 1561 CWKGLSQCLE ETSLESSEYV TKIEKCIELL FAVLPVASQS PRADQMGSVK EWSEAVTCLQ1620
 1621 KSHRDWLYKF LQVSNLEPGN EKTNFQGDLK KIQAKAKLAK LGSVPFSELG KLKAIILNCE1680
 1681 ESDIWDVLIE IVAALHHAEG GIKRQWLIDA VEISCVSSHP STAIIFVGLL SSICCEYMPF1740
 1741 LNLDRSTVLS DMSVTVTSLL SDPSYEVVTE PFISFLWTSL ERVYSFATES DANARLSSQQ1800
 1801 IAQSERDKAP MLVKVMHYIC VAFRDHLPLE KQLRLASMDM S

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