YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA_VIBPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	39	0.92
Non-Cytoplasmic	40	44	0.83
Transmembrane Helix	45	66	0.94
Cytoplasmic	67	86	0.95
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	112	0.78
Transmembrane Helix	113	131	0.92
Cytoplasmic	132	136	0.88
Transmembrane Helix	137	156	0.90
Non-Cytoplasmic	157	162	0.78
Transmembrane Helix	163	183	0.88
Cytoplasmic	184	206	0.90
Transmembrane Helix	207	228	0.88
Non-Cytoplasmic	229	233	0.82
Transmembrane Helix	234	253	0.92
Cytoplasmic	254	263	0.83
Transmembrane Helix	264	283	0.93
Non-Cytoplasmic	284	284	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEKAKAYW QLMRMDRPIG SLLLLWPTVW ALVIAAQGIP SWDVLIVFVL GVFLMRSAGC  60
   61 VINDFADRKV DGHVKRTKQR PLPSGKVTAK EAIGLFLVLA VSSFLLVLTM NPLTIQLSFA 120
  121 GLVLAFIYPF MKRYTHIPQL FLGLAFSWAI PMAWAAQTGE LPVMVWFVFV INALWTIAYD 180
  181 TQYAMVDRDD DLKIGIKSTA ILFGRHDKLI IGVLQLVTLA MLVGLGQFYQ LGQSYYWTVL 240
  241 IAASLFVYQQ HLIRHRERDL CFRAFLNNNY VGMVIAIGLL VAFW