YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28807583
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTFSLMLV IVTLVTGVVW LLEKLVFAKK RQAKVAEIQA QTTNGLDAVT LQKVERQPWW  60
   61 IENSVSIFPV IAFVLVLRSF IYEPFQIPSG SMMPTLLVGD FILVEKYAYG LKDPVWRTQL 120
  121 VETGKPERGD IVVFKYPPQP SVDYIKRVVG LPGDIVRYSG DKQLCIQSQG ESSCKPVKLS 180
  181 NVEESQFKSN GIPMIQLDEK LGNVEHNILV NPLVRNRVEQ YFPRSGTTEW VVPQGQYFVM 240
  241 GDNRDNSADS RYWGFVPEAN LVGKAVAIWI SFEFDRGADS VLPSWIPTGV RFNRIGGIH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.53
Transmembrane Helix	7	27	0.60
Cytoplasmic	28	59	0.65
Transmembrane Helix	60	82	0.58
Non-Cytoplasmic	83	299	0.86