YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28899300, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVFQYYPWL FVVFASIFGL IVGSFLNVVI YRLPKIMELE WRRECAESFP EYKIKPPQEV  60
   61 LTLSVPRSSC QNCATPIRIR DNIPVISWLL LKGKCHHCHT AISPRYPLIE LLTAACAGFV 120
  121 AYHFGFSYFT VALIFFTFFL IAATFIDLDT MLLPDQLTLP LTWAGIALAL TEISPVSLQD 180
  181 AVIGAIAGYL CLWSVYWGFK LLTGKEGMGY GDFKLLAALG AWLGWQSLPM IILLSSVVGV 240
  241 IFGLVQLRLQ KQGIERAFPF GPYLAIAGWV SLIWGDQILS WYFTSILGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.89
Transmembrane Helix	9	31	0.92
Cytoplasmic	32	118	0.91
Transmembrane Helix	119	146	0.79
Non-Cytoplasmic	147	151	0.62
Transmembrane Helix	152	173	0.66
Cytoplasmic	174	180	0.53
Transmembrane Helix	181	199	0.86
Non-Cytoplasmic	200	224	0.75
Transmembrane Helix	225	247	0.88
Cytoplasmic	248	257	0.80
Transmembrane Helix	258	278	0.86
Non-Cytoplasmic	279	289	0.78