YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCME_VIBPA
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPRRKKRLG IVLAIFIGIS ATIGLMLYAL NQNMDLFYTP TELVNGKPDG TKPEVGQRLR  60
   61 IGGMVVVGSV RRDPNSLKVS FDLHDVGPKV TITYEGILPD LFREGQGIVA QGVLKDATTV 120
  121 EAFEVLAKHD EEYMPPEIAE AMKKTHEPLQ YSSEQKQGSG E

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.85
Non-Cytoplasmic	31	161	0.99