YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28898829, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFAIVFPG QGSQAVGMLA DLGEQYDVVK QTFAEASDAL GYDLWALVQN GPAEDLNQTF  60
   61 RTQPALLASS VAIWRVWQEL GLEQPANLAG HSLGEYSALV CAGVIDFKEA IKLVELRGKL 120
  121 MQEAVPAGTG AMYAIIGLDD DVIAKACEEA AQGDVVSPVN FNSPGQVVIA GSKDAVERAG 180
  181 ALCKEAGAKR ALPLPVSVPS HCALMKPAAD KLAVALESIE FNTPQLPVIN NVDVAAETDP 240
  241 AKIKDALVRQ LYSPVRWTES VQLMSEQGVE NLLELGPGKV LTGLTKRIVK TLSAAAVNDV 300
  301 ASLEAAK

Type	Start	End	Confidence
Signal Peptide	1	15	0.57
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	307	0.99