YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28806935, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLNIPNILS LLRLFLIPVF VVVFYLPYSW APFAAAMVFW VAGFTDWLDG MLARKLGQTS  60
   61 RFGAFIDPVA DKVLVATALI LITEHYHTIW VTIPAVTMIA REIIISALRE WMAEIGKRAS 120
  121 VAVSWVGKVK TVSQMFALWV LIWRYDEWMV WLGFAALYVA TFLTYWSMVQ YLAAAKDDLL 180
  181 NEEHH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	42	0.75
Non-Cytoplasmic	43	85	0.58
Transmembrane Helix	86	105	0.76
Cytoplasmic	106	123	0.73
Transmembrane Helix	124	143	0.68
Non-Cytoplasmic	144	147	0.75
Transmembrane Helix	148	169	0.88
Cytoplasmic	170	185	0.76