YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149746174, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGFESAFHF DSLVWDWIIA IYLFLAGMSA GAVMISIYLK RKVIEGDPAN NGIMKAMAWL  60
   61 APFGIISGLV ILIFHLTKPL QFWKIMIYYN PTSVMSMGVV LFQVYMVVLF VWIGVIFRHQ 120
  121 IISFCEGKLP SGLLDFVDGF LIKAGKVNNA IELFLGFLAL VLAAYTGFLL SALKTYPMLN 180
  181 NPVLPILFLF SSLSSGAAAC LMFGILVFKE ATSSPSVSWV HGFERPVVLF ELFVLVTFFT 240
  241 GLIFSGGQNE VAAWNAISNG FWAQWFWVGV VLIGMLMPLT LNWLMPSEVR HKGSYVFVVT 300
  301 TLSLVGVLML RTFILYAGQM TVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	39	0.95
Cytoplasmic	40	55	0.95
Transmembrane Helix	56	77	0.92
Non-Cytoplasmic	78	93	0.91
Transmembrane Helix	94	116	0.88
Cytoplasmic	117	152	0.91
Transmembrane Helix	153	173	0.91
Non-Cytoplasmic	174	185	0.83
Transmembrane Helix	186	208	0.94
Cytoplasmic	209	226	0.94
Transmembrane Helix	227	247	0.93
Non-Cytoplasmic	248	262	0.93
Transmembrane Helix	263	284	0.93
Cytoplasmic	285	294	0.84
Transmembrane Helix	295	315	0.96
Non-Cytoplasmic	316	323	0.86