YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28806728
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSSKRPMF GPLQPLAVFS LFSLAFLSIS RILLAFWQFD RIESFNDFLY ILGQGVRVDI  60
   61 ATLCWLFILP ALLSSFMPLK GKVGECWKWV LRLWMVAGLW ILVYMELATA PFIQEYDLRP 120
  121 NRLFVEYLIY PKEVMSMLWT GYKLELFIGA IGTALTLVLG WKWSKKLTDS AQQINWKWRP 180
  181 LLAIFVVLLC VAGARSSLGH RPLNPAMVAF SNDPLLNDLA LNSSYSLLFA VNNMKSEKSA 240
  241 EQFYGKMDNQ KMLDLVRASS TKIDFDPTLL PTMNSNPATY QGKRKNLVIL LQESLGAQFV 300
  301 GSLGGLPLTP NLDELMQEGW QFTQMYATGT RSVRGIEAVT TGFPPSPSRA VVKLSKSQTG 360
  361 FFTIADLLKE QGYHTQFIYG GEANFDNMKT FFFGNGFDQI VEEKNYTNPG FVGSWGVSDE 420
  421 DLYNKADEEF ERLSKGDKPF FSLVFTSSNH SPYEYPEGKI EQYDSEHMTR NNAVKYSDYA 480
  481 LGTFFDKAKK SSYWDDTIFI VIADHDARVF GANLVPVKHF HIPALIIGKD IQPRKDDRIA 540
  541 NNIDMPPTLL SLIGVDAKTP MIGRDLTKPL AREDERAMMQ YDKNFGYLTR DNLVVLSPGE 600
  601 KVSTMEYDFE SQTMKPLEVD ESVIDRAKAN ALFASKAYQN NWYSSKRTN

Type	Start	End	Confidence
Cytoplasmic	1	15	0.85
Transmembrane Helix	16	35	0.92
Non-Cytoplasmic	36	57	0.83
Transmembrane Helix	58	77	0.91
Cytoplasmic	78	89	0.84
Transmembrane Helix	90	110	0.91
Non-Cytoplasmic	111	143	0.91
Transmembrane Helix	144	163	0.92
Cytoplasmic	164	177	0.89
Transmembrane Helix	178	198	0.88
Non-Cytoplasmic	199	649	0.97