YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28806506, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNTLKRASL AMLSMMTALL LTFAMPASAE EQSSKVVQQE ITQLAGADYW REVREGQEGY  60
   61 TTSQSPEHGV LISKPGETWY ILKEKWMSPA GAVAIFGSIA MVIMAYVFVG PLMLSKPRTG 120
  121 KKMKRWSRLD RALHWSMAFT FLTLAFSGLM LVYGKHFLKP YVPTEFWGFI VMLAKQYHNY 180
  181 MGPLFFILLM FVLLKWWRKS IPNMTDIRWF MKMGGMVGKH KGTHPSAGFS NGGEKAIYWL 240
  241 LIFFGAIVAV SGLVLDFPIF GQTRRDMELS NLVHAISALI LICGFIFHIY IGLFGMEGAL 300
  301 EGMVTGEVDE TWAKEHHDLW YEEVKSKEAM GETESKPTTE KGAKANEQTS

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	89	0.99
Transmembrane Helix	90	114	0.89
Cytoplasmic	115	132	0.95
Transmembrane Helix	133	154	0.94
Non-Cytoplasmic	155	176	0.92
Transmembrane Helix	177	197	0.92
Cytoplasmic	198	235	0.86
Transmembrane Helix	236	260	0.87
Non-Cytoplasmic	261	271	0.78
Transmembrane Helix	272	294	0.91
Cytoplasmic	295	350	0.82