YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28806041, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEILRLI WWVLIGVLLV GFAVTDGFDM GVGALVPIIG KNDTQRRVMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPLVYA TSFSGFYLAM ILTLAALWLR PLGLDYRSKI EEPKWRNTWD 120
  121 ICISISGFVP PIIFGVAFGN LLQGVPFQLS EFLMPTYHGS FFGLLNPFAL LCGLVSLFMI 180
  181 LMQGSTWLQM KTTGEVHTRA RNVAQITGLL TVVAFVAAGF WVQNIDGYVI VGGIDTNAAS 240
  241 NPLNKEVIRE AGAWMKNFEN YPLLWAAPVL GVAMPLLAVL SSRLEKCAIS FITSSLGVAG 300
  301 VIFTAGFAMF PFIMPSDLMP SHSLTMWDAT SSELTLNLMT GVAFVMVPII LGYTSWTYYK 360
  361 MFGRLDDQYI EDNKNSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.68
Transmembrane Helix	9	28	0.90
Non-Cytoplasmic	29	72	0.69
Transmembrane Helix	73	99	0.82
Cytoplasmic	100	118	0.87
Transmembrane Helix	119	141	0.90
Non-Cytoplasmic	142	160	0.89
Transmembrane Helix	161	182	0.93
Cytoplasmic	183	202	0.89
Transmembrane Helix	203	222	0.96
Non-Cytoplasmic	223	260	0.97
Transmembrane Helix	261	281	0.92
Cytoplasmic	282	290	0.79
Transmembrane Helix	291	313	0.93
Non-Cytoplasmic	314	333	0.94
Transmembrane Helix	334	356	0.91
Cytoplasmic	357	378	0.96