YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28805671, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPLSLISL KNPWHLLATG FGSGLSPVVP GTMGTLAAVP FFLLLAQLPF PAYVVVVLLS  60
   61 CVIGIKICQV TSDDMKVHDH GSIVWDEFAG FWITMSIVPA LNIPITEWKW LLTGFILFRF 120
  121 FDMVKPWPIG WLDKRIHGGL GIMLDDIVAG IMAGIALFLV AKYAGWMS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	39	0.86
Non-Cytoplasmic	40	48	0.64
Transmembrane Helix	49	68	0.91
Cytoplasmic	69	87	0.76
Transmembrane Helix	88	106	0.85
Non-Cytoplasmic	107	141	0.60
Transmembrane Helix	142	166	0.81
Cytoplasmic	167	168	0.66