YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28805523, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.64
Transmembrane Helix	7	27	0.77
Cytoplasmic	28	52	0.88
Transmembrane Helix	53	74	0.79
Non-Cytoplasmic	75	78	0.68
Transmembrane Helix	79	99	0.87
Cytoplasmic	100	125	0.86
Transmembrane Helix	126	150	0.87
Non-Cytoplasmic	151	159	0.86
Transmembrane Helix	160	181	0.89
Cytoplasmic	182	189	0.83
Transmembrane Helix	190	211	0.93
Non-Cytoplasmic	212	235	0.92
Transmembrane Helix	236	256	0.93
Cytoplasmic	257	272	0.93
Transmembrane Helix	273	297	0.90
Non-Cytoplasmic	298	320	0.90
Transmembrane Helix	321	344	0.90
Cytoplasmic	345	364	0.95
Transmembrane Helix	365	386	0.84
Non-Cytoplasmic	387	394	0.58
Transmembrane Helix	395	415	0.87
Cytoplasmic	416	421	0.81
Transmembrane Helix	422	440	0.97
Non-Cytoplasmic	441	447	0.77
Transmembrane Helix	448	470	0.89
Cytoplasmic	471	494	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWFLTCVAA LIGGYFIYGA FVEKIFGINE KRQTPAHTKT DGVDFVPMST KKVYLVQLLN  60
   61 IAGVGPIFGP IMGALYGPAA MLWIVVGCIF AGAVHDYFSG MLSVRNGGAS VPTITGRYLG 120
  121 NGAKHFMNIF AIVLLLLVGV VFVSAPAGMI TNLINDQTSL NVSMTTMVVV IFAYYIIATI 180
  181 VPVDKIIGRF YPLFGALLIF MSVGLMTAVA LSSEHTVMGD FQVTDMFSNL NPNDMPLWPA 240
  241 LFITIACGAI SGFHATQSPL MARCMENEKN GRFVFYGAMI GEGVIALIWC AIALSFFGSL 300
  301 EALSEAVKNG GPGNVVYSAS FGLLGVFGGI IAFLGVVILP ITSGDTAFRS SRLILAEYFN 360
  361 MEQKTLRNRL LMAVPLFVIG GVLTQVDFGI IWRYFGFANQ TTAVMMLWTA SAYLLRHNKL 420
  421 HWITTIPAMF MTTVCVTFIL NNSSLGFGLP MQVSTIAGVI FSLVVTGYVI KTSKGKGESE 480
  481 LADEEKPQAV TETA