YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28805522
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELVISLLQQ MCVYLVLAYM LSKTPIILPL LSISSRLSHR LICYVLFSGF CILGTYFGLH  60
   61 INDAIANTRA IGAVMGGLFG GPVVGFAVGL TGGIHRYSLG GFTDLACAIS TTAEGVIGGL 120
  121 LHVYLIKRNK GALLFNPSVV FSVTFVAEVV QMILLLAVAK PFDQAYELVS AIAAPMIIAN 180
  181 SFGAALFMSI LQDRKTIFEK YSATFSRRAL TIADRSVGIL SNGFNTENAE KIARIIYEET 240
  241 KVGAVAITDQ EKILAFVGIG DDHHRPNTPI SSQSTLDSME KNDIIYLDGT ERPYQCSLAK 300
  301 DCKLGSALII PLRAGKAVIG TIKLYEPKRK LFSTANMSMA EGIAQLLSSQ ILYGDYQQQQ 360
  361 ALLAQAEIKL LHAQVNPHFL FNALNTISAI TRRDPDKARE LIQNLSHFFR SNLKQNINTV 420
  421 TLKEELAHVN SYLSIEKARF TDRLEVEIDI DPELLDIKLP SFTLQPLVEN AIKHGISNML 480
  481 EGGKVKIYSE MHPQGHLITV EDNAGSFQPP KDNHSGLGLE IVDKRLTNQF GRDSALKIAC 540
  541 VTHQFTKMSF IIPPKS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.74
Transmembrane Helix	11	33	0.80
Non-Cytoplasmic	34	40	0.60
Transmembrane Helix	41	60	0.95
Cytoplasmic	61	69	0.67
Transmembrane Helix	70	94	0.87
Non-Cytoplasmic	95	101	0.66
Transmembrane Helix	102	126	0.85
Cytoplasmic	127	132	0.75
Transmembrane Helix	133	158	0.84
Non-Cytoplasmic	159	167	0.69
Transmembrane Helix	168	191	0.88
Cytoplasmic	192	556	0.68