YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28897277, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.69
Transmembrane Helix	12	35	0.88
Cytoplasmic	36	55	0.66
Transmembrane Helix	56	74	0.61
Non-Cytoplasmic	75	79	0.58
Transmembrane Helix	80	107	0.72
Cytoplasmic	108	140	0.87
Transmembrane Helix	141	161	0.91
Non-Cytoplasmic	162	178	0.84
Transmembrane Helix	179	197	0.96
Cytoplasmic	198	205	0.83
Transmembrane Helix	206	225	0.95
Non-Cytoplasmic	226	240	0.75
Transmembrane Helix	241	261	0.82
Cytoplasmic	262	299	0.91
Transmembrane Helix	300	320	0.90
Non-Cytoplasmic	321	349	0.89
Transmembrane Helix	350	371	0.92
Cytoplasmic	372	386	0.95
Transmembrane Helix	387	410	0.88
Non-Cytoplasmic	411	416	0.77
Transmembrane Helix	417	436	0.95
Cytoplasmic	437	477	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLINLMND LLWGSILVYL LVGVGIYFTV RLGFIQFRHF GHMFSVLKNS RKADKAGISS  60
   61 FQALCTSLAA RVGTGNMAGV AVALTAGGPG AIFWMWLIAM LGMATSFAES TLAQLYKTKD 120
  121 DDGNYRGGPA YYMEKGLGMR WMGVLFSVFL IIAFGLVFNA VQANSIANAM SNAFGWNDLY 180
  181 VGIAVVALSA VVIFGGIKRI AKVAELIVPI MALLYLVLAL FVVFSNLEKL PDVLMLIFKS 240
  241 AFGLQEAAAG GLGYAIAQAM INGIKRGLFS NEAGMGSAPN AAASATPYPP HPASQGYVQM 300
  301 LGVFMDTIVI CSATVAIILM SGEYVGQATE VTGIELTQRA LSSQVGDWGG IFVAVAIFFF 360
  361 AFTSIIANYS YAETNLIFLE HNHKAGLSIF RVVVLGMVMF GALASLPVVW SLADVSMGLM 420
  421 AIVNLVAILL LSGIVIKLAK DYNRQLGEGK VPTFDANDFP ELKSQLEDGI WDNTKKD