YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28897144, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	48	0.77
Transmembrane Helix	49	70	0.87
Cytoplasmic	71	78	0.78
Transmembrane Helix	79	101	0.88
Non-Cytoplasmic	102	133	0.87
Transmembrane Helix	134	155	0.88
Cytoplasmic	156	162	0.61
Transmembrane Helix	163	182	0.82
Non-Cytoplasmic	183	213	0.79
Transmembrane Helix	214	235	0.88
Cytoplasmic	236	242	0.80
Transmembrane Helix	243	264	0.84
Non-Cytoplasmic	265	270	0.78
Transmembrane Helix	271	293	0.89
Cytoplasmic	294	312	0.76
Transmembrane Helix	313	333	0.94
Non-Cytoplasmic	334	650	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPDAKIKI QNFGRFLSNM VMPNIGAFIA WGFITALFIP TGWLPNETLA SMVGPMITYL  60
   61 LPLLIGYTGG KLVGGDRGAV VGAITTMGVI VGTDIPMFMG AMMVGPMGGW AIKKFDNYID 120
  121 GKVKSGFEML VNNFSAGIIG MLCAILAFFL IGPFVKVLSG ALAAGVNFLV SAHLLPLTSI 180
  181 FVEPAKILFL NNAINHGIFS PLGIQQASET GQSIFFLIEA NPGPGLGILL AYMVFGKGTA 240
  241 RQTAGGASII HFFGGIHEIY FPYILMNPRL ILAAIAGGMT GVFVLTMFNA GIVSPASPGS 300
  301 IFAILLMTQK GSIVGVLASI AAATGVSFAV ASLLMKTQTS TEEDGDEAAL EKATSQMKDM 360
  361 KSSSKNGAVV NNESKGDVDL ATVQSIIVAC DAGMGSSAMG ASMLRKKVQD AGLNVHVTNL 420
  421 AINSLPESAD IVITHKDLTG RARKHAPNAH HISLTNFLDS EMYNQLVTKL LAAQKQSAAN 480
  481 DDQMVKVSVL AANDDSFEPQ QPSVFQIQRE NIHLGLKAAN KEEAIRFAGN KLVELGYAEP 540
  541 EYVDAMFERE ALVPTYLGES IAVPHGTVEA KDRVKKTGIV ICQYPSGIQF TEDDDDVAKL 600
  601 VIGIAAKNDE HIQVITTITN ALDEPEAIEK LTSTNDVEEI LNILGGQQAA