YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28805203
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPQKESNQN YLPYPPHPQQ DHDEIDLREL FKALWEGKWI VIATTFVIAV SAVLYALSLP  60
   61 NIYKADALLA PAESSNGGGL SKMAGQLGGL AALAGVNLGA SESSQTDLAV QVMRSRQFIN 120
  121 TFINKHDLLV PLMAGKDWDL SNNKLILDEE LYNPNTGEWL RDAKGLRGAT PTAQEAFEVF 180
  181 SKEVLSINQD KESGLYTVSM KNYSPYIAQQ WVNWLIEDIN KAMRERTIAE TSQNLAYLNT 240
  241 QLQKTAVTDM QSTFYKLIEE QTKSLMLAEV QEEFVFKVVD PAVVPELKDS PKRVLICVLG 300
  301 ILLGVMLGVA IVLIRIVFRK EDTENLEPRT

Type	Start	End	Confidence
Cytoplasmic	1	38	0.83
Transmembrane Helix	39	59	0.91
Non-Cytoplasmic	60	82	0.78
Transmembrane Helix	83	100	0.67
Cytoplasmic	101	293	0.77
Transmembrane Helix	294	318	0.89
Non-Cytoplasmic	319	330	0.78