YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28378815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPDSQKQRW SAQRLIRILV VILLVLTIFF MGKQVDWLLD PVRQFFSIVG LPIILAGVLY  60
   61 YLLNPLVDWL EKRFRVRRTW TIIGLFIVVV ALLALGIIAI IPTIRDQTLS IINDWPNYWK 120
  121 NASTEVNRWL NDPQLSSIRD QLESWNTDLS KLVSGRFSKY LTGTVTSLTG VFSTVTTVII 180
  181 GLITMPFILF YLLRDGHQLP KYMAKFVPTK ARSGFLEVLT EINSQVSNYI RGQLTVAFFV 240
  241 AVMFAVGYSI IGLKFALTLG IAAGILNLIP YLGSFLAMVP SVVIALVTSP WMLVQVLIVF 300
  301 VIEQTIEGRF ISPLVLGSSL AIHPITILVV LLAAGKIFGL MGVIFGIPGY AILKVLWTHL 360
  361 FDWYRRSSGL YEAEATPSTD QTNK

Type	Start	End	Confidence
Cytoplasmic	1	14	0.94
Transmembrane Helix	15	33	0.94
Non-Cytoplasmic	34	43	0.79
Transmembrane Helix	44	63	0.94
Cytoplasmic	64	79	0.87
Transmembrane Helix	80	101	0.94
Non-Cytoplasmic	102	169	0.96
Transmembrane Helix	170	193	0.91
Cytoplasmic	194	233	0.97
Transmembrane Helix	234	257	0.83
Non-Cytoplasmic	258	275	0.63
Transmembrane Helix	276	301	0.81
Cytoplasmic	302	309	0.85
Transmembrane Helix	310	332	0.88
Non-Cytoplasmic	333	336	0.68
Transmembrane Helix	337	358	0.89
Cytoplasmic	359	384	0.92